Thank you for your feedback.
Unfortunately this is not a simple issue as you may imagine. I have already explained the problems in the past in this other post.
phpclasses.org/blog/post/45-Package
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There I present a solution that will attempt to solve the problems minimizing the conflicts, in the section of site redesign proposals.
The reason why it has not been implemented so far is because there have always been too many priority things to implement. But it will be implemented soon or later, so please be patient.